No go and pat that dork instead. He needs it.

Patpat this dork.

Check this website out: http://www.behindthevoiceactors.com/franchises/Megami-Tensei/

Without the indoctrination theory, there are too many plot holes. How do your squad mates that were down on the ground with you end up on the Normandy? Why is Joker fleeing the battle when it is completely out of character? Why don't the planets blow up when the mass relays explode? None of it makes sense.

Yup exactly. Plus if I the whole indoctrination theory is correct, red is the only right option.

Blue at 4 in the morning when I forget what the options were. Red every other time ;)